The Team
Dr. Mohammad Faiz Khan
Postdoctoral fellow
Dr Mohammad Faiz possesses expertise in integrating two significant modelling paradigms: COBRA and PBPK. He focuses on developing a comprehensive whole-body metabolic modelling framework for assessing drug effectiveness and toxicity, while also predicting optimal dosages for systems biomedicine application.
Joe Desbonnet
Computer scientist
Joe Desbonnet is responsible for maintaining the computational infrastructure of the research group.
Timothy O. Hulshof
PhD student
Timothy obtained his Master's degree in bioinformatics from the University College Cork, Ireland. His work includes enabling the large-scale integration of metagenomic data with microbiome-level metabolic models.
Research Assistant
Catherine obtained her Master’s degree in Integrated System Biology from the University of Luxembourg. Her interests lie in the cross between the application of whole-body computational models of metabolism for in-silico trials and drug-discovery.
Joanne Cooney
Research Assistant
Joanne obtained her Bachelor’s degree in Science, specializing in microbiology from the University of Galway. Her interests lie in the in microbial and human metabolism, and microbiome studies. Her focus in the research group is to curate drug metabolism pathways, for the integration into the Whole-body Metabolic reconstruction.
Natalia Makosa
Research Assistant
Natalia obtained her Bachelor's in Science from the University of Galway, majoring in microbiology. Her keen interest lie in drug-host-microbiome interactions. She is working to curate drug metabolism pathways, for the integration into the whole-body metabolic reconstruction.
Previous Team Members
PhD students:
Dr. Almut Heinken - Research fellow, now Associate Professor, Nantes University, France.
Dr. Johannes Hertel - Research fellow, now Junior Professor, University of Greifswald, Germany
Dr. Bronson Weston - Research fellow
Dr. Dmitry A. Ravcheev - Research fellow
Visiting PhD students:
Arianna Basile - Post-doctoral fellow at Cambridge University.
Gwendolyn Gusak
Elaine Zaunseder
Visiting master students:
Thibault Vangeneugden
Research Assistants:
Subashini Kennedy
David Sharkey
Marcus Hogan
Renee Waschkowitz
Summer students:
Liveta, Natalia, Roisin, Adam, Joanne Cooney, Joanne Malone